The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Weigt, Lee A.; Baldwin, Carole C.; Driskell, Amy; Smith, David G.; Ormos, Andrea; Reyier, Eric A. Using DNA Barcoding to Assess Caribbean Reef Fish Biodiversity: Expanding Taxonomic and Geographic Coverage PLoS ONE 2012-07-16;7(7):e41059 (PDF)
Luiz A. Rocha, Kenyon C. Lindeman, Claudia R. Rocha and H.A. Lessios Historical biogeography and speciation in the reef fish genus Haemulon (Teleostei: Haemulidae). Molecular Phylogenetics and Evolution 2008-09-01;48(3):918-928 (PDF)
Valdez-Moreno, M.
Ivanova, N.V.
Elias-Gutierrez, M.
Pedersen, S.L.
Bessonov, K.
Hebert, P.D.N. Using eDNA to biomonitor the fish community in a tropical oligotrophic lake Bacalar PlosOne 2019-04-22;14(4):e0215505 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Mexico - [40]
Bermuda - [7]
Belize - [15]
Bahamas - [1]
Trinidad and Tobago - [2]
Curacao - [3]
United States - [7]
Puerto Rico - [1]
DATA MANAGERS:
Public Data:
Private Data:
Charles S Walker - [6] Amy C. Driskell - [19] Robert Hanner - [4] Martha Valdez-Moreno - [34] Lourdes Vasquez-Yeomans - [6] Janessa Fletcher - [2]
Charles S Walker - [2] Robert Hanner - [1] Amy C. Driskell - [8]
El Colegio de la Frontera Sur, Unidad Chetumal - [40]
Florida Fish and Wildlife Conservation Commission, Fish and Wildlife Research Institute - [2]
Mined from GenBank, NCBI - [8]
Smithsonian Institution - [19]
Smithsonian Institution, National Museum of Natural History - [8]
Sequencing Centers:
Centre for Biodiversity Genomics - [47] Smithsonian Institution - [5] Smithsonian Institution, National Museum of Natural History - [1] Smithsonian Institution, National Museum of Natural History, Laboratories of Analytical Biology - [21]
Photography:
Eric Post - [2] Jose Angel Cohuo - [1]
Collectors:
A. Driskell - [1] Baldwin - [8] Brian Cuzzocreo - [5] C. Baldwin - [7] Carole Baldwin - [5] Carolina Quintal Lizama - [1] Carolina Quintal-Lizama & Jose Angel Cohuo Colli - [1] Chess - [1] Class - [2] Collette - [2] Cristina Castillo - [5] D. Smith - [7] Diana Acevedo Reyes - [7] Donald Griswold - [5] Dr. James Wood - [5] Estrella Malca - [1] Foltz - [1] Gabrielle Corradino - [5] Hoffman - [3] J. Mounts - [7] James Baldwin and Chip Lang - [1] Jennifer Atchison and Ron Hill - [1] Jose Angel Cohuo Colli - [4] Jose Olivares Escobedo - [2] L. Weigt - [7] Langton - [1] Laura Carrillo Bibriezca - [1] Lourdes Vasquez Yeomans - [1] Lourdes Vasquez-Yeomans - [6] Maggie Halloran - [5] Martha Valdez-Moreno & Carolina Quintal-Lizama - [2] Monica Lara & Dave Jones - [5] Mounts - [1] Parkinson - [1] Reed - [1] Roberto Herrera Pavon & Carolina Quintal-Lizama - [5] Rousseau - [1] Selene Morales Gutierrez - [10] Smith - [10] W. Lee - [1] Weigt - [7] Yanosh - [5]
Specimen Identification:
Bruce B. Collette - [2] Carole C. Baldwin - [16] Carolina Quintal Lizama - [8] David G. Smith - [9] Diana Acevedo Reyes - [2] Eric J Post - [2] Jayme E. Sones - [1] Lourdes Vasquez-Yeomans - [18] Martha Valdez-Moreno - [5] Monica Lara - [5] Selene Morales Gutierrez - [2]