The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
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Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
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Search Guidelines:
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If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Zahiri, Reza; Lafontaine, J. Donald; Schmidt, B. Christian; deWaard, Jeremy R.; Zakharov, Evgeny V.; Hebert, Paul D. N. A Transcontinental Challenge โ A Test of DNA Barcode Performance for 1,541 Species of Canadian Noctuoidea (Lepidoptera) PLoS ONE ;9(3):e92797 (PDF)
Reza Zahiri, J. Donald Lafontaine, B. Christian Schmidt, Jeremy R. deWaard, Evgeny V. Zakharov, Paul D. N. Hebert Probing planetary biodiversity with DNA barcodes: The Noctuoidea of North America PLoS ONE 2017-06-01;12(6):0-0 (PDF)
Marko Mutanen, Sami M. Kivelรค, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincฤ, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaรซns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Hausmann, Axel; Haszprunar, Gerhard; Segerer, Andreas H; Speidel, Wolfgang; Behounek, Gottfried; Hebert, Paul D N Now DNA-barcoded: the butterflies and larger moths of Germany (Lepidoptera: Rhopalocera, Macroheterocera) Spixiana 2011-09-01;34(1):47-58 (PDF)
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Peter Huemer, Marko Mutanen, Kristina M. Sefc, Paul D. N. Hebert Testing DNA Barcode Performance in 1000 Species of European Lepidoptera: Large Geographic Distances Have Small Genetic Impacts PLoS ONE 2014-12-26;9(12):e115774 (PDF)
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) โ Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [54]
Norway - [8]
United Kingdom - [22]
Germany - [28]
United States - [24]
Italy - [20]
Finland - [4]
Denmark - [1]
Spain - [3]
France - [36]
Netherlands - [3]
Austria - [21]
Bulgaria - [1]
Portugal - [2]
Greece - [1]
Switzerland - [1]
DATA MANAGERS:
Public Data:
Private Data:
CBG Project Management Team - [71] Axel Hausmann - [18] Jeremy deWaard - [21] Arild Johnsen - [5] Paul D.N. Hebert - [14] Peter Huemer - [14] Marko Mutanen - [4] Antonio S. Ortiz - [2] Rodolphe Rougerie - [4] Camiel Doorenweerd - [3] Stig Lundmo - [1] Wolfgang Stark - [7] Andreas Segerer - [1] Steffen Roth - [2] Sonia AF Ferreira - [2] Brigitte Gottsberger - [2] Sean W. Prosser - [1] Christian Widmann - [1] Carlos Lopez-Vaamonde - [29] Ben W Price - [1]
CBG Collections Unit - [1] Guilin Hu - [1] Wolfgang Stark - [1] Axel Hausmann - [1] Peter Huemer - [4] Stefano Scalercio - [7] Carlos Lopez-Vaamonde - [3] Brigitte Gottsberger - [2] Lyndall Pereira da Conceicoa - [6]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
LEFIC504-10 {Xestia xanthographa}
License:
CreativeCommons Attribution (2010)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
Canadian Forest Service, Pacific Forestry Centre - [18]
Canadian National Collection of Insects, Arachnids and Nematodes - [1]
Centre for Biodiversity Genomics - [73]
Consiglio per la Ricerca in Agricoltura e l'analisi dell'economia agraria - [7]
Helgeland Museum, Natural History Department - [1]
Landesmuseum Kaernten - [1]
Landessammlungen Niederosterreich - [1]
Mined from GenBank, NCBI - [1]
Musee cantonal de zoologie de Lausanne - [1]
Museum national d'Histoire naturelle - [1]
Natural History Museum, London - [14]
Naturalis Biodiversity Center - [3]
Research Center in Biodiversity and Genetic Resources - [2]
Research Collection of Bernard Dardenne - [3]
Research Collection of Carlos Lopez Vaamonde - [32]
Research Collection of Jeremy deWaard - [2]
Research Collection of Kai Berggren - [1]
Research Collection of Peter Lichtmannecker - [1]
Research Collection of Raimund Franz - [1]
Research Collection of Wolfgang Stark - [7]
SNSB, Zoologische Staatssammlung Muenchen - [19]
Tiroler Landesmuseum Ferdinandeum - [16]
Universidad de Murcia, Research Collection Biologia Animal - [2]
University of Bergen, Natural History Collections - [2]
University of Oslo, Natural History Museum - [4]
University of Oulu, Zoological Museum - [5]
University of Vienna, Dept of Botany and Biodiversity Research - [4]
Wellcome Sanger Institute - [6]
Sequencing Centers:
Centre for Biodiversity Genomics - [151] Naturalis Biodiversity Center - [3] University of Lausanne - [1] University of Vienna, Dept of Botany and Biodiversity Research - [4] Unknown - [1] Zhengzhou University - [1]
Photography:
Aarvik, Leif - [1] Alexandra Knapp - [1] CBG Photography Group - [1] CBG Robotic Rig - [1] Christian Wieser - [1] DNA barcoding facility - [1] Dr Axel Hausmann - [1] Dr. Antonio S. Ortiz - [2] Elisabeth Frank - [1] G. Rotheneder - [8] Giuseppe Rijllo - [7] Guilin Hu - [1] Hymenoptera Photo Group - [1] Information Pending - [7] Jérôme Barbut - [1] Jaclyn McCormick - [40] Jay Cossey - [1] Jeremy deWaard - [2] Jules Dessart-Pardon - [29] Kai Berggren - [3] Kerstin Wehinger - [3] Lepidoptera photo group - [2] Libby Avis - [5] Lotta Mörch - [3] Makrina Tsinoglou - [2] Mark J. Dreiling - [1] Marko Mutanen - [2] Megan Swan - [1] Naturalis DNA barcoding facility - [2] Richard Mally - [2] Richard Wilson - [10] Rick Turner - [3] Rodolphe Rougerie - [3] S. Heim - [1] S. Lundmo - [1] Sanger BIOSCAN Team - [5] ZSM Photography Team - [4] photo work group Dr. Axel Hausmann - [8]
Collectors:
A. Hausmann - [5] A. Li - [18] A. S. Ortiz - [1] Aarvik - [2] Alice Beaney - [1] Ana Rita Goncalves - [1] Andreas Segerer - [1] Ashleigh Whiffin - [1] Axel Hausman - [13] BEN BROWN - [1] BIO 102 course autumn 2016 - [2] Barry Yates - [1] Bjarne Skule - [1] Buchner P. - [1] C. Doorenweerd - [1] C. Doorenweerd & W. Moerland - [1] CP 2134 - [1] CP 2134a - [1] CWP 2134 - [1] CWP 2134-b - [2] CWP 2134-c - [1] Carlos Lopez Vaamonde - [31] Carlos Lopez-Vaamonde - [1] Ch. - [1] Christian Widmann - [1] DION GARRETT - [1] Dan Bock - [1] Daniel Jerga - [1] Dardenne & Drouet - [3] Erlebach S. - [1] Ernst Lohberger - [1] F.Lui - [3] F.Theimer - [1] Fabian Bartusel - [1] Franz R. - [4] G.M.Haggett - [1] GAC 0396 - [1] H. Martin - [2] Hilary Jones - [1] Huemer P. - [6] I. Iliev - [1] Isabella Sehner - [2] J. Barbut - [1] J. Derhousoff - [18] J. Troubridge - [1] J.J. Guerrero - [1] J.R. - [2] Julian Small - [1] K. Ambil - [1] KELLY JOWETT - [1] Kai Berggren - [2] Kit Houghton - [1] L Mavin & M Young - [25] L.Avis - [4] Lawniczak Mara - [2] Leif - [2] Libby Avis - [1] M. Mutanen - [1] MRY 67 - [1] Makrina Tsinoglou - [1] Marko Mutanen - [1] Martin Corley - [2] Mayr A. - [1] Mike Ashworth - [1] N. Zahm - [2] NRL 0161 - [1] OTL - [2] P. Schwarzbauer - [1] Panu Vaelimaeki - [1] Per Ole Syvertsen - [1] R.Avis - [4] Rainer Busse - [1] Reidar Voith - [1] Richard Wilson - [24] Rietz H. - [1] Ronan Conn - [1] Rui Andrade - [1] S. Erlacher - [2] S. Scalercio - [3] S. Scalercio C. Di Marco - [1] SMP 568 - [1] SPC 294 - [1] Salmon Jemma - [2] Scalercio - [1] Scalercio & Infusino - [3] Siegel C. - [4] Sonia Ferreira - [1] Stark W. - [5] Teltscher Fiona - [2] Thomas Zechmeister - [1] Tomi Mutanen - [2] V. Gayk - [1] Vladimir Blagoderov - [1] W. Moerland & C. Doorenweerd - [1] Wieser - [1] deWaard - [2] lgt. W.Stark - [3]
Specimen Identification:
Andreas Segerer - [1] Anton Mayr - [1] Antonio S. Ortiz - [2] Axel Hausmann - [17] BOLD ID Engine - [3] BOLD Identification System [2019] - [2] BOLD Identification System [] - [4] Bernard Dardenne - [3] Camiel Doorenweerd - [1] Carlos Lopez-Vaamonde - [6] Christian Wieser - [1] F. Theimer - [1] Gottfried Behounek - [1] J. Donald Lafontaine - [1] Jerome Barbut - [1] Julian Small - [1] Kai Berggren - [3] Konrad Fiedler - [1] Leif Aarvik - [2] Libby Avis - [5] Lotta AMELIE Moerch - [2] Marko Mutanen - [4] Martin Corley - [2] Peter Buchner - [1] Peter Huemer - [15] Renee Miskie - [2] Richard L. Wilson - [17] Richard Mally - [2] Stefano Scalercio - [6] Stig Lundmo - [1] Thomas Huet - [8] Tiara YASMEEN Hensel - [16] Wolfgang Stark - [7] Wouter Moerland - [2]