The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Zahiri, Reza; Lafontaine, J. Donald; Schmidt, B. Christian; deWaard, Jeremy R.; Zakharov, Evgeny V.; Hebert, Paul D. N. A Transcontinental Challenge — A Test of DNA Barcode Performance for 1,541 Species of Canadian Noctuoidea (Lepidoptera) PLoS ONE ;9(3):e92797 (PDF)
Reza Zahiri, J. Donald Lafontaine, B. Christian Schmidt, Jeremy R. deWaard, Evgeny V. Zakharov, Paul D. N. Hebert Probing planetary biodiversity with DNA barcodes: The Noctuoidea of North America PLoS ONE 2017-06-01;12(6):0-0 (PDF)
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Sujeevan Ratnasingham and Paul D. N. Hebert A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System PLoS ONE 2013-07-13;8(7):e66213 (PDF)
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Hausmann, Axel; Haszprunar, Gerhard; Segerer, Andreas H; Speidel, Wolfgang; Behounek, Gottfried; Hebert, Paul D N Now DNA-barcoded: the butterflies and larger moths of Germany (Lepidoptera: Rhopalocera, Macroheterocera) Spixiana 2011-09-01;34(1):47-58 (PDF)
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
Antonio S. Ortiz, Rosa M. Rubio, Juan J. Guerrero, Manuel J. Garre, Jose Serrano, Paul D.N. Hebert, Axel Hausmann Close congruence between Barcode Index Numbers (bins) and species boundaries in the Erebidae (Lepidoptera: Noctuoidea) of the Iberian Peninsula Biodiversity Data Journal 2017-08-08;5:0-0
P. D. N. Hebert, J. R. deWaard and J.-F. Landry DNA barcodes for 1/1000 of the animal kingdom Biology Letters 2009-12-16;6(3):359-362 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [73]
United Kingdom - [6]
Germany - [5]
Finland - [5]
Italy - [9]
United States - [4]
North Macedonia - [1]
France - [3]
Spain - [2]
Georgia - [2]
Norway - [2]
Austria - [8]
China - [4]
Slovakia - [1]
Russia - [2]
Czechia - [1]
Portugal - [3]
Kyrgyzstan - [2]
Unrecoverable - [2]
DATA MANAGERS:
Public Data:
Private Data:
CBG Project Management Team - [32] Jeremy deWaard - [41] Paul D.N. Hebert - [4] Axel Hausmann - [10] Marko Mutanen - [4] Jim M. Moore - [1] Peter Huemer - [13] Antonio S. Ortiz - [2] Arild Johnsen - [2] Scott E. Miller - [2] Charles S Walker - [12] CBG Collections Unit - [1] Wolfgang Stark - [2] Sonia AF Ferreira - [3] Mat Seidensticker - [1] Stefano Scalercio - [2] Ben W Price - [1] Rodolphe Rougerie - [3]
Charles S Walker - [2] Houshuai Wang - [1] Reza Zahiri - [3] Matthew P Besley - [1] Stefano Scalercio - [1]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
LNAUT2726-14 {Leucoma salicis}
License:
CreativeCommons Attribution (2014)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
Canadian Forest Service, Pacific Forestry Centre - [4]
Centre for Biodiversity Genomics - [64]
Consiglio per la Ricerca in Agricoltura e l'analisi dell'economia agraria - [3]
Landesmuseum Kaernten - [1]
MPG Ranch - [1]
Mined from GenBank, NCBI - [14]
Museum national d'Histoire naturelle - [1]
Natural History Museum, London - [6]
Naturmuseum Suedtirol - [1]
Research Center in Biodiversity and Genetic Resources - [3]
Research Collection of Bernard Dardenne - [2]
Research Collection of Daniel Handfield - [4]
Research Collection of Norbert Keil - [2]
Research Collection of Wolfgang Stark - [2]
Royal British Columbia Museum - [1]
SNSB, Zoologische Staatssammlung Muenchen - [10]
Smithsonian Institution, National Museum of Natural History - [2]
South China Agricultural University - [1]
Tiroler Landesmuseum Ferdinandeum - [9]
Universidad de Murcia, Research Collection Biologia Animal - [2]
University of Guelph - [2]
University of Oslo, Natural History Museum - [2]
University of Oulu - [1]
University of Oulu, Zoological Museum - [3]
University of Turku - [1]
Sequencing Centers:
Centre for Biodiversity Genomics - [114]
Photography:
Brandon Laforest - [2] CBG Photography Group - [50] Christian Wieser - [1] Dr. Antonio S. Ortiz - [2] Dr. Axel Hausmann - [1] G. Rotheneder - [2] Giuseppe Rijllo - [1] Jérôme Barbut - [1] Jaclyn McCormick - [16] Jay Cossey - [1] Jeremy deWaard - [2] Jim Moore - [5] Kai Berggren - [1] Kerstin Wehinger - [2] Lepidoptera photo group - [2] Libby Avis - [3] Marko Mutanen - [1] Mat Seidensticker - [1] Nick Jeffery - [1] Peter Huemer - [1] Rick Turner - [4] Rodolphe Rougerie - [2] Stefano Scalercio - [2] ZSM Photography Team - [3] photo work group Dr. Axel Hausmann - [3]
Collectors:
A. Hausmann - [5] A.Voronkov - [1] A.W.Thomas - [2] Adrian J. Gardiner - [1] Ana Rita Goncalves - [2] Atsalea Mutanen - [2] BIObus 2008 - [9] BIObus 2009 - [4] BIObus 2010 - [5] Bernard Dardenne - [2] C. Di Marco - [1] CWP 2031 - [1] Ch. - [1] D.Handfield - [3] Daniel Handfield - [1] Dr. Andreas H. Segerer - [1] Erlebach S. - [2] G.M.Haggett - [1] Huemer P. - [5] Huemer P. & Tarmann G. M. - [1] Huemer P. & Wiesmair B. - [1] J.J. Guerrero - [2] J.R. - [2] Jerome Barbut - [1] Jim Moore - [1] Kai Berggren - [1] Keil N. - [2] Keith Pickthorn - [30] Kolligs - [1] L Mavin & M Young - [7] L.Avis - [1] Leif Aarvik - [1] Libby Avis - [1] M. Franzen - [2] M. Scofield - [1] M. Seidensticker - [1] M. Zapletal - [1] Marko Mutanen - [4] Martin Corley - [3] Meelika Mutanen - [2] OTL - [1] P.D.N. Hebert - [2] Panu Vaelimaeki - [1] Paul Hebert - [1] R Duncan - [2] R.Avis - [1] Rainer Busse - [1] Rindos - [1] Rob Walker - [1] Ryan Gregory - [2] S. Scalercio - [1] S.J.Kohler - [2] SMP 396 - [1] Sam Thomas - [1] Scalercio-Infusino-Greco - [2] Seelaus H. - [1] Shannon Dixon - [5] Sonia Ferreira - [3] Stark W. - [2] Sylvia Mutanen - [2] Wieser - [1] deWaard - [2]
Specimen Identification:
Adrian J. Gardiner - [1] Andreas Segerer - [1] Antonio S. Ortiz - [2] Axel Hausmann - [7] BOLD Identification System [2017] - [1] BOLD Identification System [] - [1] BOLD Machine Learning Tool Kit - [1] Bernard Dardenne - [2] Christian Wieser - [1] Daniel Handfield - [1] Detlef Kolligs - [1] Houshuai Wang - [1] Jerome Barbut - [1] Jim M. Moore - [1] Kai Berggren - [1] Leif Aarvik - [1] Leland M. Humble - [7] Libby Avis - [2] Marko Mutanen - [5] Martin Corley - [3] Mathew Seidensticker - [1] Norbert Keil - [2] Paul D.N. Hebert - [1] Peter Huemer - [10] R. Duncan - [2] Reza Zahiri - [2] Stefano Scalercio - [2] Tony Thomas - [2] Wolfgang Stark - [2]