The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Zhaofu Yang, Jean-François Landry, Paul D. N. Hebert A DNA Barcode Library for North American Pyraustinae (Lepidoptera: Pyraloidea: Crambidae) PLoS ONE 2016-10-13;11(10):0-0
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Sujeevan Ratnasingham and Paul D. N. Hebert A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System PLoS ONE 2013-07-13;8(7):e66213 (PDF)
Zhaofu Yang, Jean-François Landry, Louis Handfield, Yalin Zhang, M. Alma Solis, Daniel Handfield, Brian G. Scholtens, Marko Mutanen, Matthias Nuss and Paul D. N. Hebert DNA barcoding and morphology reveal three cryptic species of Anania (Lepidoptera: Crambidae: Pyraustinae) in North America, all distinct from their European counterpart Systematic Entomology 2012-09-11;37(4):686-705 (PDF)
Thomas W. A. Braukmann, Natalia V. Ivanova Sean W. J. Prosser Vasco Elbrecht Dirk Steinke Sujeevan Ratnasingham Jeremy R. deWaard Jayme E. Sones Evgeny V. Zakharov Paul D. N. Hebert Metabarcoding a Diverse Arthropod Mock Community Molecular Ecology Resources 2019-02-18
Thomas WA Braukmann, Natalia V Ivanova, Sean WJ Prosser, Vasco Elbrecht, Dirk Steinke, Sujeevan Ratnasingham, Jeremy R deWaard, Jayme E Sones, Evgeny V Zakhariv, Paul DN Hebert Revealing the Complexities of Metabarcoding with a Diverse Arthropod Mock Community Molecular Ecology Resources 2018-10-02
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [75]
United States - [23]
DATA MANAGERS:
Public Data:
Private Data:
CBG Project Management Team - [40] Zhaofu Yang - [46] Jean-Francois Landry - [2] Daniel Handfield - [3] Chris Looney - [1] Jeremy deWaard - [1] Kenneth H Stead - [1] Charles S Walker - [1] Jason R Grant - [1]
Ellen H. Yerger - [2]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
CNCLA2192-13 {Anania tertialis}
License:
CreativeCommons Attribution (2013)
License Holder:
CNC/CBG Photography Group, Centre for Biodiversity Genomics
Canadian National Collection of Insects, Arachnids and Nematodes - [12]
Centre for Biodiversity Genomics - [73]
Indiana University of Pennsylvania - [2]
Mined from GenBank, NCBI - [1]
Research Collection of Daniel Handfield - [5]
Research Collection of Jeremy deWaard - [1]
University of Alaska Museum - [1]
University of Guelph - [2]
Washington State Department of Agriculture - [1]
Sequencing Centers:
Centre for Biodiversity Genomics - [93]
Photography:
Brandon Laforest - [1] CBG Photography Group - [28] Hilary Lyttle - [1] Information Pending - [7] Jaclyn McCormick - [6] Jason Grant - [1] Jay Cossey - [1] Jean-Francois Landry - [4] Libby Avis - [1] Richard Wilson - [4] Sarah Dykeman - [2] Spencer Walker - [1] Zhaofu Yang - [1]
Collectors:
A. W. Thomas - [1] Anderson - [1] B.Landry - [1] BIOBus 2012 - [5] BIObus 2008 - [3] BIObus 2010 - [3] BIObus 2014 - [9] Beadling - [2] Brian G. Scholtens - [3] CBG Collections Staff - [2] D.Engelking - [1] D.Handfield - [3] Daniel Handfield - [2] Eric LAGASA - [1] Eric Knight - [2] F.Tremblay - [4] Freeman&Lewis - [2] Gergin Blagoev - [1] Henry Hensel - [1] Hervanek - [2] J.E.Cossey - [3] J.R. - [1] J.R.Straka - [3] JF Landry - [2] Jason Grant - [1] Jean-Francois Landry - [2] Joa - [2] John W Brown - [1] K.H.Stead - [1] Keating - [2] Keith Pickthorn - [11] Kim Riehl - [1] L Mavin & M Young - [1] Libby Avis - [1] M. Sabourin - [2] M.Kekkonen - [1] M.Pratte - [1] Melanie - [1] Mikko Pentinsaari - [1] N.W.Jeffery - [3] Parks Canada Staff - [1] Paul Ayles - [2] Paul Hebert - [3] Richard Wilson - [12] Roberta Tesar - [1] Rod Thompson - [1] Ryan Gregory - [2] T.Eagalle - [1] Tyler Zemlak - [1] deWaard - [1]
Specimen Identification:
Angela Telfer - [17] Bernard Landry - [1] Chris Looney - [1] Daniel Handfield - [3] Eugene G. Munroe - [3] Gergin A. Blagoev - [3] Jason R Grant - [1] Jean-Francois Landry - [2] Libby Avis - [1] Mikko Pentinsaari - [3] Paul D.N. Hebert - [3] Richard L. Wilson - [3]