The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Reza Zahiri, J. Donald Lafontaine, B. Christian Schmidt, Jeremy R. deWaard, Evgeny V. Zakharov, Paul D. N. Hebert Probing planetary biodiversity with DNA barcodes: The Noctuoidea of North America PLoS ONE 2017-06-01;12(6):0-0 (PDF)
Zahiri, Reza; Lafontaine, J. Donald; Schmidt, B. Christian; deWaard, Jeremy R.; Zakharov, Evgeny V.; Hebert, Paul D. N. A Transcontinental Challenge — A Test of DNA Barcode Performance for 1,541 Species of Canadian Noctuoidea (Lepidoptera) PLoS ONE ;9(3):e92797 (PDF)
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Sujeevan Ratnasingham and Paul D. N. Hebert A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System PLoS ONE 2013-07-13;8(7):e66213 (PDF)
Angela C Telfer, Monica R Young, Jenna Quinn, Kate Perez, Crystal N Sobel, Jayme E Sones, Valerie Levesque-Beaudin, Rachael Derbyshire, Jose Fernandez-Triana, Rodolphe Rougerie, Paul D N Hebert, Jeremy R deWaard and contributors. Biodiversity inventories in high gear: DNA barcoding facilitates a rapid biotic survey of a temperate nature reserve Biodiversity Data Journal 2015-08-30;3(e6313):1-176 (PDF)
B. Christian Schmidt and Felix A. H. Sperling Widespread decoupling of mtDNA variation and species integrity in Grammia tiger moths (Lepidoptera: Noctuidae) Systematic Entomology 2008-10-01;33(4):613-634 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [112]
United States - [135]
DATA MANAGERS:
Public Data:
Private Data:
Evgeny V. Zakharov - [12] Marek L Borowiec - [27] Jeremy deWaard - [49] Charles S Walker - [2] CBG Project Management Team - [136] Paul D.N. Hebert - [5] Jean-Francois Landry - [13] Christian Schmidt - [1] Scott E. Miller - [1]
Canadian National Collection of Insects, Arachnids and Nematodes - [22]
Centre for Biodiversity Genomics - [145]
College of Charleston - [2]
Colorado State University - [27]
Mined from GenBank, NCBI - [2]
Private Collection of Ann S. Hendrickson - [2]
Research Collection of B. C. Schmidt - [2]
Research Collection of Brian Scholtens - [4]
Research Collection of Daniel Handfield - [4]
Research Collection of Hugo Kons, Jr. - [6]
Research Collection of J. B. Sullivan - [4]
Research Collection of Robert J. Borth - [2]
Smithsonian Institution, National Museum of Natural History - [4]
University of Alberta, Strickland Museum of Entomology - [11]
University of Guelph - [10]
University of Maryland - [1]
Sequencing Centers:
Centre for Biodiversity Genomics - [224]
Photography:
Ann S. Hendrickson - [6] Brandon Laforest - [6] CBG Photography Group - [112] Chad Whitmell - [5] Dallas Hudson - [1] Hilary Lyttle - [1] Information Pending - [1] Jaclyn McCormick - [6] James Sullivan - [2] Jay Cosey - [3] Jay Cossey - [27] Jean-Francois Landry - [12] Leptree project group - [1] Libby Avis - [1] Nick Jeffery - [9] Rick Turner - [3] Young-suk - [3]
Collectors:
A. W. Thomas - [1] A.Borisenko - [9] A.W.Thomas - [5] Ann Hendrickson - [2] Aud I. - [5] B. C. - [6] BIObus 2008 - [12] BioBus 2011 - [5] C. - [3] C. Bordelon - [1] C. Harp - [6] C.Sobel - [5] C.Vandermeer - [5] CBG Collections Staff - [5] Chuck & Chris Harp - [1] Chuck Harp - [5] Cook - [3] Craig Segebarth - [1] D. Bridgehouse - [1] D.C. Ferguson - [3] D.Engelking - [13] D.Handfield - [3] D.W. Strasburg - [1] Dallas Clell Hudson - [1] Daniel Handfield - [1] E. Buckner and P.A. Opler - [2] Ed Knudson & Charles Bordelon - [2] Eric H. Metzler - [2] Fischer - [5] G. G Anweiler - [2] Gergin Blagoev - [1] Hugo Kons Jr. - [1] Hugo Kons Jr. & Robert J. Borth - [5] Ian Segebarth - [1] Irving Finkelstein - [2] J. Boiling Sullivan - [2] J. Bolling Sullivan - [7] J. DeWaard - [2] J. Dewaard - [1] J. deWaard - [5] J.-F. Landry & V. Nazari - [7] J.A. Bess - [1] J.B.Sullivan - [4] J.Cossey - [8] J.F. Landry - [5] J.Sones - [1] J.Straka - [2] JB Sullivan - [4] JF Landry - [5] James Adams - [4] James B. Sullivan - [5] Jean-Francois Landry - [1] Jeremy deWaard - [1] K. Pickthorn - [5] K. Pickthorn & J. deWaard - [15] K.Perez - [9] Keith Pickthorn - [8] Kevin Segebarth - [3] Libby Avis - [1] M.C. Garhart - [7] M.Kekkonen - [13] Mark Dreiling - [2] Mikko Pentinsaari - [1] Miles Zhang - [2] N. Jeffery - [1] N.Jeffery - [1] Neal McFarland - [1] Opler and Buckner - [2] P. Opler & E. Buckner - [2] P.A. Opler - [4] P.D.N. Hebert - [13] Paul Hebert - [11] R.A. Belmont - [2] Ryan Gregory - [10] S.McCubbin - [10] Schmidt - [6] Simonson - [6] Soowon Cho - [1] Steve Scott - [2] T. Dickel - [2] T.Eagalle - [13] T.F.Mitterboeck - [5] T.M. Gilligan - [1] V.Junea - [5] rare BioBlitz collecting team - [1]
Specimen Identification:
Ann S. Hendrickson - [2] Anthony W. Thomas - [1] BOLD ID Engine - [3] Christian Schmidt - [7] Evgeny V. Zakharov - [1] Gergin A. Blagoev - [21] Hugo L. Kons, Jr. - [8] J. Donald Lafontaine - [1] James B. Sullivan - [14] Jean-Francois Landry - [12] Libby Avis - [1] Mark J. Mello - [2] Paul D.N. Hebert - [10] Robert F. Denno - [1] Steve Scott - [2] Tony Thomas - [5] USNM Curators - [3]