The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Sujeevan Ratnasingham and Paul D. N. Hebert A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System PLoS ONE 2013-07-13;8(7):e66213 (PDF)
P. D. N. Hebert, J. R. deWaard and J.-F. Landry DNA barcodes for 1/1000 of the animal kingdom Biology Letters 2009-12-16;6(3):359-362 (PDF)
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Peter Huemer, Paul D. N. Hebert, Marko Mutanen, Christian Wieser, Benjamin Wiesmair, Axel Hausmann, Roman Yakovlev, Markus Möst, Brigitte Gottsberger, Patrick Strutzenberger, Konrad Fiedler Large geographic distance versus small DNA barcode divergence: Insights from a comparison of European to South Siberian Lepidoptera PLoS ONE 2018-06-08;13(11):0-0
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
Hausmann, Axel; Haszprunar, Gerhard; Segerer, Andreas H; Speidel, Wolfgang; Behounek, Gottfried; Hebert, Paul D N Now DNA-barcoded: the butterflies and larger moths of Germany (Lepidoptera: Rhopalocera, Macroheterocera) Spixiana 2011-09-01;34(1):47-58 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [67]
United States - [39]
Germany - [11]
China - [2]
United Kingdom - [1]
Mongolia - [10]
Finland - [3]
France - [1]
Norway - [1]
Russia - [6]
Austria - [3]
Portugal - [1]
DATA MANAGERS:
Public Data:
Private Data:
Axel Hausmann - [23] Vladimir A. Lukhtanov - [1] Paul D.N. Hebert - [3] CBG Project Management Team - [82] Jeremy deWaard - [15] Gregory R. Pohl - [1] Jim M. Moore - [1] Scott E. Miller - [1] Charles S Walker - [4] Evgeny V. Zakharov - [1] Arild Johnsen - [1] Peter Huemer - [4] James B. Sullivan - [2] Wolfgang Stark - [1] Marko Mutanen - [3] Sonia AF Ferreira - [1] Gunnar Brehm - [1] Rodolphe Rougerie - [1]
David L. Wagner - [1]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
LNAUS5145-13 {Euphyia intermediata}
License:
CreativeCommons Attribution (2013)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
Canadian Forest Service, Northern Forestry Centre - [1]
Canadian Forest Service, Pacific Forestry Centre - [1]
Canadian National Collection of Insects, Arachnids and Nematodes - [8]
Centre for Biodiversity Genomics - [77]
College of Charleston - [1]
Landesmuseum Kaernten - [1]
Mined from GenBank, NCBI - [4]
Phyletisches Museum Jena - [1]
Research Center in Biodiversity and Genetic Resources - [1]
Research Collection of Alfred Haslberger - [1]
Research Collection of Bernard Dardenne - [1]
Research Collection of Daniel Handfield - [1]
Research Collection of J. B. Sullivan - [2]
Research Collection of Jeremy deWaard - [2]
Research Collection of Theo Gruenewald - [1]
Research Collection of Wolfgang Stark - [1]
Royal British Columbia Museum - [4]
SNSB, Zoologische Staatssammlung Muenchen - [21]
Saint Petersburg State University - [1]
Smithsonian Institution, National Museum of Natural History - [1]
Tiroler Landesmuseum Ferdinandeum - [3]
University of Alberta, Strickland Museum of Entomology - [4]
University of Connecticut - [1]
University of Guelph - [1]
University of Oslo, Natural History Museum - [1]
University of Oulu, Zoological Museum - [3]
Washington State University, James Entomological Collection - [1]
Sequencing Centers:
Centre for Biodiversity Genomics - [132]
Photography:
Aarvik, Leif - [1] CBG Photography Group - [45] Christian Wieser - [1] David L. Wagner - [1] Dr. Axel Hausmann - [3] G. Rotheneder - [1] Gunnar Brehm - [1] Hilary Lyttle - [3] I.A. Makhov - [1] Information Pending - [10] Jaclyn McCormick - [6] James Sullivan - [2] Jeremy deWaard - [16] Jim Moore - [3] Lepidoptera photo group - [2] Libby Avis - [2] M.-Y. Chen - [2] Megan Swan - [1] Richard Wilson - [2] Rick Turner - [1] Spencer Walker - [1] Young-suk - [1] ZSM Photography Team - [8] photo work group Dr. Axel Hausmann - [5]
Collectors:
A. - [3] A. Haslberger - [1] A. Hausmann - [1] A. Li - [1] A. W. Thomas - [3] Aarvik - [1] Adams - [5] Atsalea Mutanen - [1] Aud I. - [1] B. C. - [3] B.C. Schmidt - [2] BIO Collections - [1] BIObus 2008 - [2] BIObus 2009 - [2] BIObus 2010 - [1] Baerbel Kirchner - [1] Brian G. Scholtens - [1] C. Wang - [1] CBG Collections Staff - [5] Ch. - [1] Cyndi Smith - [1] D. A.; Macaulay - [1] D.Handfield - [1] Dardenne & Drouet - [1] David L. Wagner - [1] Dr. D. Kolligs - [1] Dr. Theo Gruenewald - [1] Emma Sylvester - [1] F. Theimer - [1] Fischer - [1] Floriani - [2] Franz Theimer - [1] G. Anweiler - [2] G.M.Haggett - [1] Guskova - [3] Huemer P. & Wiesmair B. - [2] I.Makhov - [1] J. Adams and I. Finkelstein - [4] J. Bolling Sullivan - [3] J. Derhousoff - [1] J.B.Sullivan - [2] J.Brown - [1] J.D. Lafontaine - [2] J.E.Cossey - [1] J.R.Straka - [1] Jeremy deWaard - [1] Jim Ballantyne - [1] Jim Moore - [1] Keith Pickthorn - [2] Khishigdelger Enkhtur - [1] Kolligs - [1] L Mavin & M Young - [2] L. Weigert - [1] L.Avis - [2] Leif - [1] Li - [3] M. Taehtinen - [1] Macaulay - [1] Marko Mutanen - [3] Martin Corley - [1] Maxim Larrivee - [1] Meelika Mutanen - [1] Michael Pogue - [1] N.W.Jeffery - [1] Olga Schmidt - [1] Opler - [2] P. - [2] P.D.N. Hebert - [3] P.J. Landolt - [1] Panu Vaelimaeki - [1] Paul Hebert - [17] R. Yakovlev - [6] R.Avis - [2] Rainer Busse - [1] Richard Wilson - [15] Rouge NUP BioBlitz Volunteers - [1] Ryan Gregory - [1] S. H. - [1] S.Monsalve - [1] Saldaitis - [3] Schmidt - [3] Sonia Ferreira - [1] Sylvia Mutanen - [1] Tarmann & Erlebach - [1] Tyler Zemlak - [1] Wieser - [1] lgt. W.Stark - [1] local collector - [1]
Specimen Identification:
Andreas Segerer - [1] Anthony W. Thomas - [3] Axel Hausmann - [19] BOLD Identification System [2017] - [1] BOLD Identification System [] - [2] Bernard Dardenne - [1] Brian G. Scholtens - [1] Christian Schmidt - [2] Christian Wieser - [1] Crispin S. Guppy - [1] Detlef Kolligs - [2] Evgeny V. Zakharov - [1] Gergin A. Blagoev - [7] Gunnar Brehm - [1] Ilya A Makhov - [1] James B. Sullivan - [5] Jim M. Moore - [1] Leif Aarvik - [1] Leland M. Humble - [2] Libby Avis - [2] Marko Mutanen - [3] Martin Corley - [1] Olga Schmidt - [1] Paul D.N. Hebert - [16] Peter Huemer - [3] Richard L. Wilson - [9] Tanner A Matson - [1] Wolfgang Stark - [1]