The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Axel Hausmann, H. Charles J. Godfray, Peter Huemer, Marko Mutanen, Rodolphe Rougerie, Erik J. van Nieukerken, Sujeevan Ratnasingham and Paul D. N. Hebert Genetic Patterns in European Geometrid Moths Revealed by the Barcode Index Number (BIN) System PLoS ONE 2013-12-17;8(12):e84518 (PDF)
Sujeevan Ratnasingham and Paul D. N. Hebert A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System PLoS ONE 2013-07-13;8(7):e66213 (PDF)
Hausmann, Axel; Haszprunar, Gerhard; Segerer, Andreas H; Speidel, Wolfgang; Behounek, Gottfried; Hebert, Paul D N Now DNA-barcoded: the butterflies and larger moths of Germany (Lepidoptera: Rhopalocera, Macroheterocera) Spixiana 2011-09-01;34(1):47-58 (PDF)
Peter Huemer, Marko Mutanen, Kristina M. Sefc, Paul D. N. Hebert Testing DNA Barcode Performance in 1000 Species of European Lepidoptera: Large Geographic Distances Have Small Genetic Impacts PLoS ONE 2014-12-26;9(12):e115774 (PDF)
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
Huemer, Peter; Hebert, Paul D N DNA-Barcoding von Schmetterlingen (Lepidoptera) in Waldstandorten Südtirols (IT01 Ritten und IT02 Montiggl) Forest observer 2012-08-14;6(1):75-98 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [63]
Italy - [11]
Germany - [14]
United Kingdom - [8]
United States - [2]
Finland - [3]
Croatia - [1]
France - [5]
Russia - [5]
Netherlands - [1]
Austria - [7]
China - [4]
Czech Republic - [2]
Norway - [2]
Portugal - [1]
DATA MANAGERS:
Public Data:
Private Data:
Charles S Walker - [8] Jeremy deWaard - [43] CBG Project Management Team - [18] Axel Hausmann - [26] Paul D.N. Hebert - [7] Marko Mutanen - [3] Evgeny V. Zakharov - [1] Peter Huemer - [8] Rodolphe Rougerie - [2] Camiel Doorenweerd - [1] Arild Johnsen - [2] CBG Collections Unit - [1] Martin Sigut - [2] Scott E. Miller - [1] Wolfgang Stark - [1] Sonia AF Ferreira - [1] Vladimir A. Lukhtanov - [2] Ben W Price - [1] Nikolaus U Szucsich - [1]
CBG Collections Unit - [1] Jeremy deWaard - [1] Stefano Scalercio - [2] Carlos Lopez-Vaamonde - [2] Daniel Handfield - [1] Rodolphe Rougerie - [1] Matthew P Besley - [1]
Canadian Forest Service, Pacific Forestry Centre - [38]
Canadian National Collection of Insects, Arachnids and Nematodes - [3]
Centre for Biodiversity Genomics - [14]
Chinese Academy of Sciences, Institute of Zoology - [4]
Consiglio per la Ricerca in Agricoltura e l'analisi dell'economia agraria - [2]
Consorzio Studi Universitari - [1]
Croatian Natural History Museum - [1]
Landesmuseum Kaernten - [1]
Mined from GenBank, NCBI - [8]
Natural History Museum, London - [2]
Naturalis Biodiversity Center - [1]
Naturhistorisches Museum Wien - [1]
Research Center in Biodiversity and Genetic Resources - [1]
Research Collection of Alfred Haslberger - [1]
Research Collection of Antoine Leveque - [1]
Research Collection of Bernard Dardenne - [2]
Research Collection of Carlos Lopez Vaamonde - [2]
Research Collection of Daniel Handfield - [1]
Research Collection of Ian Watkinson - [1]
Research Collection of Jeremy deWaard - [10]
Research Collection of Omar Cao Nuoro Sardinia - [2]
Research Collection of Wolfgang Stark - [1]
Royal British Columbia Museum - [5]
SNSB, Zoologische Staatssammlung Muenchen - [17]
Saint Petersburg State University - [2]
Smithsonian Institution, National Museum of Natural History - [1]
Tiroler Landesmuseum Ferdinandeum - [6]
University of Alberta, Strickland Museum of Entomology - [1]
University of Oslo, Natural History Museum - [2]
University of Ostrava - [2]
University of Oulu, Zoological Museum - [3]
inatura, Dornbirn - [1]
Sequencing Centers:
Centre for Biodiversity Genomics - [120] Naturalis Biodiversity Center - [1]
Photography:
Antoine Leveque - [1] C. Jaeger - [1] CBG Photography Group - [2] CBG Robotic Rig - [1] Christian Wieser - [1] DNA barcoding facility - [1] Daniel Handfield - [1] Dr. Axel Hausmann - [1] G. Rotheneder - [1] Giuseppe Rijllo - [2] I.A. Makhov - [2] Jaclyn McCormick - [7] Jay Cossey - [2] Jeremy deWaard - [26] Kai Berggren - [2] Kirchweger S - [1] Lepidoptera photo group - [1] Libby Avis - [4] Louison Cama - [2] Martin Sigut - [2] Nicholas J. H. Silverson - [1] Peter Huemer - [2] Y.Zou - [4] ZSM Photography Team - [9] photo Stefano Scalercio - [2] photo work group Dr. Axel Hausmann - [8]
Collectors:
A. - [14] A. Haslberger - [1] A. Li - [30] A. Segerer - [2] A.Voronkov - [1] Anctil - [1] Antoine Leveque - [1] Anweiler - [2] Axel Hausmann - [1] B. Kirchner - [1] Bernard Dardenne - [2] CP 1669 - [1] CP 1669-a - [1] Carlos Lopez Vaamonde - [2] Ch. - [1] D.R. Simmonds - [1] Doorenweerd - [1] E. La Gasa - [1] Franz Theimer - [1] G. G. - [1] G.M.Haggett - [1] GAC 0058 - [1] Gary - [1] H. Martin - [1] Handfield D. - [1] Hausmann - [1] Huang - [1] Huemer P. - [7] I.Makhov - [2] Ian Watkinson - [1] Infusino - [2] J. Derhousoff - [30] J. Gelbrecht - [1] J. Troubridge - [2] J.R. - [1] John Owen - [1] Jon Curson - [1] Kai Berggren - [2] Kirchweger - [1] Kuzneoov - [1] L Mavin & M Young - [1] L.Avis - [4] Li - [12] M. Buchanan - [1] M. Infusino & T. Bonacci - [1] M. Kucinic - [1] M. Vajdic - [1] Marko Mutanen - [2] Markus Rantala - [1] Martin Corley - [1] N. Zahm - [2] O. Cao - [3] O. Hawlitschek - [1] O.Ermakov - [1] P. Drozd - [2] Panu Vaelimaeki - [2] R Duncan: D Manastyrski: J Anderson - [1] R. Duncan - [2] R.Avis - [4] RAB 170 - [1] Rainer Busse - [1] Ron Moyes - [1] S. Erlacher - [1] S. Scalercio - [2] S. Whitney - [2] SMP 365 - [1] Scalercio - [2] Sonia Ferreira - [1] Stefan - [1] T. Botton - [1] V. Gayk - [1] V.Vekhnik - [1] Wieser - [1] Y.Zou - [4] deWaard - [1] lgt. W.Stark - [1]
Specimen Identification:
Antoine Leveque - [1] Axel Hausmann - [22] BOLD Identification System [] - [1] Bernard Dardenne - [2] Carlos Lopez-Vaamonde - [2] Christian Schmidt - [1] Christian Wieser - [1] Daniel Handfield - [1] David C. Lees - [1] Douglas C. Ferguson - [1] Ilya A Makhov - [2] Iva Mihoci - [1] Kai Berggren - [2] Leland M. Humble - [1] Libby Avis - [4] Marko Mutanen - [3] Martin Corley - [1] Martin Sigut - [2] Paul D.N. Hebert - [1] Peter Huemer - [6] R. Duncan - [1] Stefan Kirchweger - [1] Stefano Scalercio - [2] Wolfgang Stark - [1] Wouter Moerland - [1] Xue Dayong - [1]