The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Gergin A. Blagoev, Jeremy R. DeWaard, Sujeevan Ratnasingham, Stephanie L. DeWaard, Liuqiong Lu, James Robertson, Angela C. Telfer, Paul D. N. Hebert Untangling taxonomy: a DNA barcode reference library for Canadian spiders Molecular Ecology Resources 2015-07-26;16(1):325-341 (PDF)
Matthias F. Geiger, Jerome Moriniere, Axel Hausmann, Gerhard Haszprunar, Wolfgang Wägele, Paul D.N. Hebert & Björn Rulik Testing the Global Malaise Trap Program – How well does the current barcode reference library identify flying insects in Germany? Biodiversity Data Journal 2016-12-01;4(e10671):1-22 (PDF)
Angela C Telfer, Monica R Young, Jenna Quinn, Kate Perez, Crystal N Sobel, Jayme E Sones, Valerie Levesque-Beaudin, Rachael Derbyshire, Jose Fernandez-Triana, Rodolphe Rougerie, Paul D N Hebert, Jeremy R deWaard and contributors. Biodiversity inventories in high gear: DNA barcoding facilitates a rapid biotic survey of a temperate nature reserve Biodiversity Data Journal 2015-08-30;3(e6313):1-176 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [98]
Bulgaria - [3]
Turkey - [3]
Poland - [12]
United States - [4]
Russia - [3]
Finland - [5]
United Kingdom - [10]
Germany - [39]
Norway - [8]
Netherlands - [1]
Slovenia - [4]
Austria - [11]
Denmark - [1]
France - [7]
China - [2]
Georgia - [2]
Sweden - [2]
Slovakia - [2]
Spain - [1]
DATA MANAGERS:
Public Data:
Private Data:
Thibaud Decaens - [4] Talya D Hackett - [3] CBG Project Management Team - [99] Claudia Copley - [1] Gergin A. Blagoev - [21] Marko Mutanen - [4] Andrew G. Briscoe - [1] Lars Hendrich - [2] Arild Johnsen - [4] Niclas R Fritzen - [1] Oscar Vorst - [1] Klemen Candek - [2] Bjoern Rulik - [14] Charles S Walker - [6] Stefan Schmidt - [1] Torbjorn Ekrem - [3] Jorg Spelda - [3] Lars Krogmann - [2] Steffen Roth - [1] Student Portal Manager - [1] Zan Kuralt - [1] CBG Collections Unit - [2] Dana Strasiftakova - [2] Matthew P Besley - [1] Ana Riesgo - [1]
Thibaud Decaens - [2] Lara D Gibson - [2] Bjoern Rulik - [26] CBG Collections Unit - [3] Stephan Koblmueller - [1] Lyndall Pereira da Conceicoa - [3] Matthew P Besley - [2]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
TDWGB830-10 {Araneus diadematus}
License:
CreativeCommons Attribution (2010)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
Bulgarian Academy of Sciences, Institute of Zoology - [2]
Centre for Biodiversity Genomics - [115]
Dalhousie University, Dept of Biology - [2]
Mined from GenBank, NCBI - [4]
NTNU University Museum, Department of Natural History - [3]
Natural History Museum, London - [3]
Naturalis Biodiversity Center - [1]
Oekoteam, Institute for Animal Ecology and Landscape Planning - [1]
Research Collection of Ari Kakko - [1]
Research Collection of E. Kuzmin - [1]
Research Collection of Niclas Fritzen - [1]
Research Collection of Yuri G. Alekseenko - [2]
Royal British Columbia Museum - [1]
Royal Ontario Museum - [1]
SNSB, Zoologische Staatssammlung Muenchen - [6]
Slovak National Museum, Natural History Museum - [2]
Slovenian Academy of Sciences and Arts, Jovan Hadzi Institute of Biology - [1]
Smithsonian Institution, National Museum of Natural History - [1]
Staatliches Museum fur Naturkunde, Stuttgart - [2]
Universitat Autonoma de Barcelona - [1]
Universite de Montpellier - [6]
University of Bergen, Natural History Collections - [1]
University of Guelph - [2]
University of Ljubljana, Biotechnical Faculty - [1]
University of New England - [1]
University of Oslo, Natural History Museum - [4]
University of Oulu, Zoological Museum - [3]
University of Oxford - [2]
University of Oxford, Wytham Field Station - [1]
University of Toronto, Scarborough - [2]
Wellcome Sanger Institute - [3]
Zoologisches Forschungsmuseum Alexander Koenig - [42]
Sequencing Centers:
Beijing Genomics Institute - [26] Centre for Biodiversity Genomics - [134] GATC Biotech AG - [2] Generic Commercial Labs - [1] LGC Genomics, Germany - [2] Macrogen, Europe - [1] Macrogen, Korea - [11] Natural History Museum, London - [1] Smithsonian Institution, National Museum of Natural History, Laboratories of Analytical Biology - [1]