The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Reza Zahiri, J. Donald Lafontaine, B. Christian Schmidt, Jeremy R. deWaard, Evgeny V. Zakharov, Paul D. N. Hebert Probing planetary biodiversity with DNA barcodes: The Noctuoidea of North America PLoS ONE 2017-06-01;12(6):0-0 (PDF)
Sujeevan Ratnasingham and Paul D. N. Hebert A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System PLoS ONE 2013-07-13;8(7):e66213 (PDF)
Zahiri, Reza; Lafontaine, J. Donald; Schmidt, B. Christian; deWaard, Jeremy R.; Zakharov, Evgeny V.; Hebert, Paul D. N. A Transcontinental Challenge — A Test of DNA Barcode Performance for 1,541 Species of Canadian Noctuoidea (Lepidoptera) PLoS ONE ;9(3):e92797 (PDF)
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
P. D. N. Hebert, J. R. deWaard and J.-F. Landry DNA barcodes for 1/1000 of the animal kingdom Biology Letters 2009-12-16;6(3):359-362 (PDF)
Jeremy R. deWaard, Valerie Levesque-Beaudin, Stephanie L. deWaard, Natalia V. Ivanova, Jaclyn T.A. McKeown, Renee Miskie, Suresh Naik, Kate H.J. Perez, Sujeevan Ratnasingham, Crystal N. Sobel, Jayme E. Sones, Claudia Steinke, Angela C. Telfer, Andrew D. Young, Monica R. Young, Evgeny V. Zakharov, and Paul D.N. Hebert Expedited assessment of terrestrial arthropod diversity by coupling Malaise traps with DNA barcoding. Genome 2018-09-26 (PDF)
Thomas W. A. Braukmann, Natalia V. Ivanova Sean W. J. Prosser Vasco Elbrecht Dirk Steinke Sujeevan Ratnasingham Jeremy R. deWaard Jayme E. Sones Evgeny V. Zakharov Paul D. N. Hebert Metabarcoding a Diverse Arthropod Mock Community Molecular Ecology Resources 2019-02-18
Thomas WA Braukmann, Natalia V Ivanova, Sean WJ Prosser, Vasco Elbrecht, Dirk Steinke, Sujeevan Ratnasingham, Jeremy R deWaard, Jayme E Sones, Evgeny V Zakhariv, Paul DN Hebert Revealing the Complexities of Metabarcoding with a Diverse Arthropod Mock Community Molecular Ecology Resources 2018-10-02
Paul D. N. Hebert, Thomas W. A. Braukmann, Sean W. J. Prosser, Sujeevan Ratnasingham, Jeremy R. deWaard, Natalia V. Ivanova, Daniel H. Janzen, Winnie Hallwachs, Suresh Naik, Jayme E. Sones and Evgeny V. Zakharov A Sequel to Sanger: amplicon sequencing that scales BMC Genomics 2018-03-27;19(219):0-0
Angela C Telfer, Monica R Young, Jenna Quinn, Kate Perez, Crystal N Sobel, Jayme E Sones, Valerie Levesque-Beaudin, Rachael Derbyshire, Jose Fernandez-Triana, Rodolphe Rougerie, Paul D N Hebert, Jeremy R deWaard and contributors. Biodiversity inventories in high gear: DNA barcoding facilitates a rapid biotic survey of a temperate nature reserve Biodiversity Data Journal 2015-08-30;3(e6313):1-176 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [90]
United States - [52]
DATA MANAGERS:
Public Data:
Private Data:
Jeremy deWaard - [22] CBG Project Management Team - [95] Jean-Francois Landry - [1] Evgeny V. Zakharov - [14] Kimberley Shropshire - [3] Paul D.N. Hebert - [1] Carlo Seifert - [1]
Kelsey J Mcgurrin - [1] CBG Collections Unit - [2] Evgeny V. Zakharov - [1] CBG Project Management Team - [1]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
IAWL003-09 {Palthis angulalis}
License:
CreativeCommons Attribution (2009)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
Biology Centre of the Czech Academy of Sciences, Institute of Entomology - [1]
Canadian Forest Service, Pacific Forestry Centre - [4]
Canadian National Collection of Insects, Arachnids and Nematodes - [4]
Centre for Biodiversity Genomics - [101]
Research Collection of Daniel Handfield - [16]
Research Collection of Hugo Kons, Jr. - [2]
Research Collection of the Segebarth Family - [1]
University of Arizona, Insect Collection - [1]
University of Delaware - [3]
University of Guelph - [6]
University of Maryland - [1]
Sequencing Centers:
Canadian Centre for DNA Barcoding - [1] Centre for Biodiversity Genomics - [131]
Photography:
Alexandra Knapp - [1] Brandon Laforest - [6] CBG Photography Group - [67] CBG Robotic Rig - [2] Carlo L. Seifert - [1] Chad Whitmell - [1] Chris Taylor or Kimberley Shropshire - [6] Hilary Lyttle - [1] Information Pending - [6] Jaclyn McCormick - [10] Jean-Francois Landry - [1] Liam Cardarelli-Goddard - [2] Libby Avis - [3] Richard Wilson - [1] Rick Turner - [4]
Collectors:
A. Li - [4] A. W. Thomas - [2] A.Borisenko - [2] Aud I. - [1] B. Sharp - [1] BIO Collections Staff - [2] BIOBus 2012 - [1] BIObus 2008 - [4] BIObus 2009 - [6] BIObus 2010 - [3] BioBus 2011 - [1] Brenden Bertrand - [1] Brian G. Scholtens - [2] CBG Collections Staff - [5] D.Handfield - [1] Daniel Handfield - [15] Darrin Bausch - [1] Douglas Tallamy - [3] Duane Brown - [1] Field Party - [1] Fischer - [1] G. Anweiler - [2] Hugo Kons Jr. & Robert J. Borth - [2] Ian Segebarth - [1] Ian Watkinson - [1] J. Andrews - [1] J. Bolling Sullivan - [2] J. Derhousoff - [4] J. deWaard - [1] J.Cossey - [3] J.E.Cossey - [3] J.F. Landry - [1] J.McCormick - [3] J.R.Straka - [3] J.Sones - [3] JF Landry - [1] James B. Sullivan - [1] Jen Reimer - [1] Josh Palumbo - [1] Julie - [1] K. Pickthorn - [1] K.Perez - [2] Keith Pickthorn - [2] L.Avis - [3] M.Brown - [2] Mark Dreiling - [3] Maxim Larrivee - [3] Michael Pogue - [2] Miles Zhang - [1] N.W.Jeffery - [3] P.D.N. Hebert - [14] Paul Hebert - [11] R.Avis - [3] Richard Wilson - [7] Rouge NUP BioBlitz Volunteers - [1] Ryan Gregory - [6] S.McCubbin - [2] Steve Scott - [2] Tyler Peters - [1] rare BioBlitz collecting team - [1]
Specimen Identification:
Angela Telfer - [4] Anthony W. Thomas - [2] BOLD ID Engine - [4] BOLD Machine Learning Tool Kit - [1] Daniel Handfield - [15] Hugo L. Kons, Jr. - [2] J. Donald Lafontaine - [1] James B. Sullivan - [2] Kate Perez - [13] Libby Avis - [3] Paul D.N. Hebert - [10] Richard L. Wilson - [4] Steve Scott - [2]