The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Zahiri, Reza; Lafontaine, J. Donald; Schmidt, B. Christian; deWaard, Jeremy R.; Zakharov, Evgeny V.; Hebert, Paul D. N. A Transcontinental Challenge — A Test of DNA Barcode Performance for 1,541 Species of Canadian Noctuoidea (Lepidoptera) PLoS ONE ;9(3):e92797 (PDF)
Reza Zahiri, J. Donald Lafontaine, B. Christian Schmidt, Jeremy R. deWaard, Evgeny V. Zakharov, Paul D. N. Hebert Probing planetary biodiversity with DNA barcodes: The Noctuoidea of North America PLoS ONE 2017-06-01;12(6):0-0 (PDF)
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Sujeevan Ratnasingham and Paul D. N. Hebert A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System PLoS ONE 2013-07-13;8(7):e66213 (PDF)
P. D. N. Hebert, J. R. deWaard and J.-F. Landry DNA barcodes for 1/1000 of the animal kingdom Biology Letters 2009-12-16;6(3):359-362 (PDF)
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Peter Huemer, Paul D. N. Hebert, Marko Mutanen, Christian Wieser, Benjamin Wiesmair, Axel Hausmann, Roman Yakovlev, Markus Möst, Brigitte Gottsberger, Patrick Strutzenberger, Konrad Fiedler Large geographic distance versus small DNA barcode divergence: Insights from a comparison of European to South Siberian Lepidoptera PLoS ONE 2018-06-08;13(11):0-0
Hausmann, Axel; Haszprunar, Gerhard; Segerer, Andreas H; Speidel, Wolfgang; Behounek, Gottfried; Hebert, Paul D N Now DNA-barcoded: the butterflies and larger moths of Germany (Lepidoptera: Rhopalocera, Macroheterocera) Spixiana 2011-09-01;34(1):47-58 (PDF)
Peter Huemer, Marko Mutanen, Kristina M. Sefc, Paul D. N. Hebert Testing DNA Barcode Performance in 1000 Species of European Lepidoptera: Large Geographic Distances Have Small Genetic Impacts PLoS ONE 2014-12-26;9(12):e115774 (PDF)
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
Huemer, Peter; Hebert, Paul D N DNA-Barcoding von Schmetterlingen (Lepidoptera) in Waldstandorten Sdtirols (IT01 Ritten und IT02 Montiggl) Forest observer 2012-08-14;6(1):75-98 (PDF)
H. Wirta, G. Várkonyi, C. Rasmussen, R. Kaartinen, N. M. Schmidt, P. D. N. Hebert, M. Barták, G. Blagoev, H. Disney, S. Ertl, P. Gjelstrup, D. J. Gwiazdowicz , L. Huldén, J. Ilmonen, J. Jakovlev, M. Jaschhof, J. Kahanpää, T. Kankaanpää, P. H. Krogh, R. Labbee, C. Lettner, V. Michelsen, S. A. Nielsen, T. R. Nielsen, L. Paasivirta, S. Pedersen, J. Pohjoismäki, J. Salmela, P. Vilkamaa, H. Väre, M. von Tschirnhaus, T. Roslin Establishing a community‐wide DNA barcode library as a new tool for arctic research Molecular Ecology Resources 2015-11-25;16(3):809-822
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [168]
Russia - [5]
United States - [14]
Norway - [6]
Germany - [6]
Austria - [7]
Finland - [4]
Italy - [4]
France - [1]
Tajikistan - [1]
China - [1]
Georgia - [2]
Greenland - [5]
Mongolia - [1]
Kyrgyzstan - [1]
DATA MANAGERS:
Public Data:
Private Data:
CBG Project Management Team - [81] Jeremy deWaard - [88] Paul D.N. Hebert - [4] Arild Johnsen - [4] Axel Hausmann - [10] Peter Huemer - [12] Marko Mutanen - [3] Rodolphe Rougerie - [1] Robert J. Borth - [2] Helena K. Wirta - [2] Derek S. Sikes - [1] Evgeny V. Zakharov - [2] Wolfgang Stark - [1] Steffen Roth - [1] Lifescanner Team - [1] Charles S Walker - [1] Gunnar Brehm - [1] Mat Seidensticker - [1] CBG Collections Unit - [1] Jason R Grant - [2]
May Bente Brurberg - [1] David L. Wagner - [1] Peter Huemer - [1] Marko Mutanen - [1] Jason R Grant - [3]
Canadian Forest Service, Pacific Forestry Centre - [26]
Canadian National Collection of Insects, Arachnids and Nematodes - [1]
Centre for Biodiversity Genomics - [91]
Landesmuseum Kaernten - [1]
MPG Ranch - [1]
Mined from GenBank, NCBI - [1]
Norwegian Institute for Agricultural and Environmental Research - [1]
Phyletisches Museum Jena - [1]
Research Collection of Alfred Haslberger - [1]
Research Collection of Bernard Dardenne - [1]
Research Collection of Daniel Handfield - [1]
Research Collection of Jeremy deWaard - [4]
Research Collection of Marko Tahtinen - [1]
Research Collection of Rudolf Tannert - [1]
Research Collection of Wolfgang Stark - [1]
Royal British Columbia Museum - [26]
SNSB, Zoologische Staatssammlung Muenchen - [8]
Tiroler Landesmuseum Ferdinandeum - [12]
University of Alaska Museum - [6]
University of Bergen, Natural History Collections - [1]
University of British Columbia, Beaty Biodiversity Museum, Spencer Entomological Collection - [26]
University of Connecticut - [1]
University of Copenhagen - [2]
University of Oslo, Natural History Museum - [4]
University of Oulu, Zoological Museum - [3]
Vilnius University, Institute of Ecology of Nature Research - [4]
Sequencing Centers:
Canadian Centre for DNA Barcoding - [1] Centre for Biodiversity Genomics - [220] GATC Biotech AG - [1] Unknown - [1]
Photography:
Aidas Saldaitis - [4] Alexandra Knapp - [1] CBG Photography Group - [59] CBG Robotic Imager - [1] Casey Bickford - [1] Christian Wieser - [1] David L. Wagner - [1] Even Sannes Riiser - [1] G. Behounek - [1] G. Rotheneder - [1] Gunnar Brehm - [1] Information Pending - [1] Jaclyn McCormick - [17] Jason Grant - [5] Jay Cossey - [1] Jeremy deWaard - [83] Kai Berggren - [1] Kerstin Wehinger - [1] Lepidoptera photo group - [1] Libby Avis - [7] LifeScaner User - [3] M. Seidensticker - [2] Marko Tähtinen - [1] Nick Jeffery - [2] Piia Partanen - [2] Richard Mally - [1] Rick Turner - [4] Rodolphe Rougerie - [1] S. Heim - [2] Trude Magnussen - [1] ZSM Photography Team - [4] photo work group Dr. Axel Hausmann - [3]
Collectors:
A. Haslberger - [1] A. Hausmann - [1] A. W. Thomas - [8] Aarvik - [1] Aud I. - [13] BIO 102 course autumn 2016 - [1] BIObus 2008 - [8] BIObus 2009 - [13] BIObus 2010 - [3] BIObus 2014 - [2] Bernard Dardenne - [1] Butkevicius - [2] Butkevicius M. leg - [1] Ch. - [1] Christiansen - [1] Claus - [1] D.Collet - [4] D.Handfield - [1] David Wagner - [1] Doenges T. - [1] Dominique M. Collet - [1] Dr. Andreas H. Segerer - [1] E. Albert - [1] Ethan Bowser - [1] Fischer - [13] Floriani & Saldaitis - [1] Gurko - [1] Hausmann - [1] Huemer P. - [7] Huemer P. & Wiesmair B. - [3] J.Kullberg - [1] J.McGowan - [6] J.R. - [82] Jason Grant - [5] Jens Boecher - [2] Jim Ballantyne - [1] Kai Berggren - [1] Kate Stone - [1] Keil N. - [1] Keith Pickthorn - [4] Khishigdelger Enkhtur - [1] L.Avis - [6] Leif - [1] Leif Aarvik - [1] Libby Avis - [2] M. Franzen - [2] M.Pierce - [1] Marko Mutanen - [4] Marko Tahtinen - [1] Mat Seidensticker - [1] P.D.N. Hebert - [13] Panu Vaelimaeki - [2] Paul Hebert - [2] R.Avis - [6] Richard Wilson - [1] Rudi Tannert - [1] S. Cannings - [1] Shannon Dixon - [1] Stark W. - [1] Sverre Kobro - [1] W. Schacht - [1] Wieser - [1] deWaard - [82]
Specimen Identification:
Andreas Segerer - [2] Anthony W. Thomas - [8] Axel Hausmann - [7] BOLD Identification System [] - [2] Bernard Dardenne - [1] Christian Wieser - [1] Clifford D. Ferris - [1] Crispin S. Guppy - [6] David L. Wagner - [1] Evgeny V. Zakharov - [1] Gergin A. Blagoev - [6] Gunnar Brehm - [1] J. Donald Lafontaine - [2] Jason R Grant - [5] Jayme E. Sones - [11] Kai Berggren - [1] Leif Aarvik - [3] Libby Avis - [8] Marko J. Taehtinen - [1] Marko Mutanen - [3] Mathew Seidensticker - [1] Norbert Keil - [1] Paul D.N. Hebert - [2] Peter Huemer - [11] Renee Miskie - [1] Richard Mally - [1] Sverre Kobro - [1] Wolfgang Stark - [1]