The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Gontran Sonet, Kurt Jordaens, Yves Braet, Luc Bourguignon, Erena Dupont, Thierry Backeljau, Marc de Meyer and Stijn Desmyter Utility of GenBank and the Barcode of Life Data Systems (BOLD) for the identification of forensically important Diptera from Belgium and France ZooKeys 2013-12-30;365:307-328 (PDF)
Matthias F. Geiger, Jerome Moriniere, Axel Hausmann, Gerhard Haszprunar, Wolfgang Wägele, Paul D.N. Hebert & Björn Rulik Testing the Global Malaise Trap Program – How well does the current barcode reference library identify flying insects in Germany? Biodiversity Data Journal 2016-12-01;4(e10671):1-22 (PDF)
M. A. Cummings, R. D. Moon and E. S. Krafsur North American face flies Old World origins: mitochondrial evidence. Medical and Veterinary Entomology 2005-03-01;19(1):48-52 (PDF)
Sujatha Narayanan Kutty, Thomas Pape, Adrian Pont, Brian M. Wiegmann and Rudolf Meier The Muscoidea (Diptera: Calyptratae) are paraphyletic: Evidence from four mitochondrial and four nuclear genes. Molecular Phylogenetics and Evolution 2008-11-01;49(2):639-652 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [117]
Netherlands - [10]
Finland - [2]
Portugal - [24]
Belgium - [2]
United States - [57]
Germany - [127]
Spain - [1]
France - [1]
Poland - [1]
India - [1]
Italy - [4]
Turkey - [1]
United Kingdom - [14]
Costa Rica - [1]
Austria - [7]
Unrecoverable - [1]
DATA MANAGERS:
Public Data:
Private Data:
Camille Le Roy - [2] CBG Collections Unit - [3] CBG Project Management Team - [93] Charles S Walker - [91] Eva S.A. Rolo - [23] Jere Kahanpaa - [2] Gontran Sonet - [1] Bjoern Rulik - [94] Beverly Mcclenaghan - [3] Stefan Schmidt - [9] Sonia AF Ferreira - [1] Matthew P Besley - [1] Ben W Price - [1]
Oscar Vorst - [8] Yvonne Linton - [2] Evgeny V. Zakharov - [1] Bjoern Rulik - [28] Paul D.N. Hebert - [21] CBG Collections Unit - [60] Matthew P Besley - [2] Lyndall Pereira da Conceicoa - [11] Charles S Walker - [1]
Finnish Museum of Natural History, Zoological Museum - [1]
Mined from GenBank, NCBI - [92]
National Institute of Criminalistics and Criminology, Belgium - [1]
Natural History Museum, London - [4]
Naturalis Biodiversity Center - [8]
Research Center in Biodiversity and Genetic Resources - [1]
Research Collection of Beverly Mcclenaghan - [1]
SNSB, Zoologische Staatssammlung Muenchen - [9]
Smithsonian Institution, National Museum of Natural History - [2]
Universidade de Lisboa, Faculdade de Ciencias - [23]
University of Turku, Zoological Museum - [1]
Wageningen University and Research - [2]
Wellcome Sanger Institute - [11]
Zoologisches Forschungsmuseum Alexander Koenig - [122]
Sequencing Centers:
Beijing Genomics Institute - [28] Centre for Biodiversity Genomics - [199] Natural History Museum, London - [1] Naturalis Biodiversity Center - [8] Royal Belgian Institute of Natural Sciences - [1] Smithsonian Institution, National Museum of Natural History, Laboratories of Analytical Biology - [2]
Photography:
CBG Photography Group - [1] CBG Robotic Imager - [8] CBG Robotic Rig - [76] Camille Le Roy - [2] Grace Bannon - [2] Jay Cossey - [1] Megan Swan - [2] Meri Lähteenaro - [1] Naturalis DNA barcoding facility - [7] Piia Partanen - [1] Sanger BIOSCAN Team - [9] Spencer Walker - [9]
Collectors:
Aija White - [1] Alicia Tilker - [5] Antti Haarto - [1] Austin - [5] Austin; Laine - [1] B. Maples - [6] B. McClenaghan - [3] B. Weary - [2] BIO Collections - [1] BIOBus 2012 - [3] BIObus 2009 - [1] BIObus 2014 - [1] Baker - [6] Barb Maschke - [4] Barry Yates - [1] Benjamin - [7] Benjamin; Hardage - [2] Benjamin; Koehler - [1] Bill Urwin - [1] Brandt - [11] CBG Collections Staff - [2] Camille Le Roy - [2] Carla Palangio - [1] Cathy - [1] Chris Doerr - [4] Chrystal Simon - [28] Claire Carvell - [6] D. - [9] D.Janzen - [1] Deborah Beaumont - [1] Diana Phan - [2] Dick Belgers - [2] Doczkal - [9] Dr Mike Ashworth - [1] Ellie - [2] Ellie Grove - [6] Eva; Deer - [2] Eva; Wall - [1] Fred Giles - [1] GBOL-Team ZFMK - [28] Giar-Ann - [1] Glenn Fine - [1] Hannah Kendrick - [3] Hans Huijbregts - [3] Horna Lowell - [3] J. - [9] J. Cossey - [7] James Sones - [9] Jen - [1] Jere Kahanpaeae - [1] Jesse - [5] Jesse; Tang - [1] John Pollock - [1] Joke van Erkelens - [2] Joop Prijs - [1] Julia G. Betz - [2] Julian Small - [1] Julie McColl - [1] Karen Larter - [1] Kimorie Lees - [2] Korneyev - [11] Kung - [1] Labo MIC - [1] Laine - [5] Linda Phillips - [1] Luke Mitchell - [2] Maples - [4] Michael - [1] Mike Ashworth - [1] Mr Andrew Grayson - [1] NHMLAC - [10] Nadine Mitschunas - [6] Nathan - [1] Nicholas Seebach - [1] Paul Harris - [1] Paul Hebert - [11] Richard Wilkerson - [2] Rodolphe Rougerie - [1] Rui Andrade - [1] Rulik et al - [94] S. & Voith - [9] S. Korneyev - [6] Sarah Lenehan - [2] Schmidt - [9] Scott - [2] Severyn - [5] Severyn; Maples - [6] Stone Barns Center - [2] T. Shute - [3] Terry Saunders - [1] Thomas Zechmeister - [7] Topeka - [1] Trish Shute - [1] UCR - [1] Vince Cloward - [1] W.Hallwachs - [1] Weary - [11] Yvonne Linton - [2]
Specimen Identification:
Aija F White - [1] Andrew Grayson - [1] BOLD Identification System [2017] - [5] BOLD Identification System [2018] - [2] BOLD Identification System [2019] - [1] BOLD Identification System [] - [104] BOLD Machine Learning Tool Kit - [5] Camille Le Roy - [2] Dick Belgers - [2] Dieter Doczkal - [8] Hans Huijbregts - [3] Hans-Georg Rudzinski - [20] Jade Savage - [78] Jere Kahanpaa - [1] Jerome Moriniere - [1] Joke A. Van Erkelens - [2] Joop Prijs - [1] Juergen Kappert - [5] Julian Small - [1] Kaj Winqvist - [1] Mike Ashworth - [1] Paul D.N. Hebert - [15] Renee Miskie - [2] Robin M. Floyd - [1] Rui Andrade - [1] Ryan Mitchell - [1] Wolfgang Adaschkiewitz - [3] Yves Braet - [1] Yvonne Linton - [2]