The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
H. Wirta, G. Várkonyi, C. Rasmussen, R. Kaartinen, N. M. Schmidt, P. D. N. Hebert, M. Barták, G. Blagoev, H. Disney, S. Ertl, P. Gjelstrup, D. J. Gwiazdowicz , L. Huldén, J. Ilmonen, J. Jakovlev, M. Jaschhof, J. Kahanpää, T. Kankaanpää, P. H. Krogh, R. Labbee, C. Lettner, V. Michelsen, S. A. Nielsen, T. R. Nielsen, L. Paasivirta, S. Pedersen, J. Pohjoismäki, J. Salmela, P. Vilkamaa, H. Väre, M. von Tschirnhaus, T. Roslin Establishing a community‐wide DNA barcode library as a new tool for arctic research Molecular Ecology Resources 2015-11-25;16(3):809-822
Jeremy R. deWaard, Valerie Levesque-Beaudin, Stephanie L. deWaard, Natalia V. Ivanova, Jaclyn T.A. McKeown, Renee Miskie, Suresh Naik, Kate H.J. Perez, Sujeevan Ratnasingham, Crystal N. Sobel, Jayme E. Sones, Claudia Steinke, Angela C. Telfer, Andrew D. Young, Monica R. Young, Evgeny V. Zakharov, and Paul D.N. Hebert Expedited assessment of terrestrial arthropod diversity by coupling Malaise traps with DNA barcoding. Genome 2018-09-26 (PDF)
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
Matthias F. Geiger, Jerome Moriniere, Axel Hausmann, Gerhard Haszprunar, Wolfgang Wägele, Paul D.N. Hebert & Björn Rulik Testing the Global Malaise Trap Program – How well does the current barcode reference library identify flying insects in Germany? Biodiversity Data Journal 2016-12-01;4(e10671):1-22 (PDF)
Sujeevan Ratnasingham and Paul D. N. Hebert A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System PLoS ONE 2013-07-13;8(7):e66213 (PDF)
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [179]
United States - [144]
Italy - [5]
United Kingdom - [11]
Germany - [52]
Finland - [7]
Austria - [15]
Greenland - [3]
Exception - Quarantine Capture - [1]
Russia - [3]
Bulgaria - [2]
Norway - [3]
Liechtenstein - [1]
Portugal - [5]
France - [12]
Kyrgyzstan - [1]
Greece - [1]
Sweden - [5]
Pakistan - [1]
DATA MANAGERS:
Public Data:
Private Data:
Jean-Francois Landry - [154] Kenneth H Stead - [1] CBG Project Management Team - [91] CBG Collections Unit - [9] Thibaud Decaens - [1] Vazrick Nazari - [57] Paul D.N. Hebert - [1] Marko Mutanen - [7] Andreas Segerer - [36] Matthias Nuss - [2] Peter Huemer - [17] Chris Looney - [2] Helena K. Wirta - [3] Arild Johnsen - [3] Charles S Walker - [1] Axel Hausmann - [2] Beverly Mcclenaghan - [1] Lifescanner Team - [1] Sonia AF Ferreira - [1] Alfred Haslberger - [3] Kurt Lechner - [1] Carlos Lopez-Vaamonde - [3] Wolfgang Stark - [1] Jan Sumpich - [1] Gregory R. Pohl - [1] Marten Klinth - [3] Scott E. Miller - [1]
Jean-Francois Landry - [11] Peter Huemer - [2] Carlos Lopez-Vaamonde - [7] Lyndall Pereira da Conceicoa - [10] Vazrick Nazari - [1] Axel Hausmann - [3] Marten Klinth - [2] Alfred Haslberger - [6] Pierre henri Fabre - [1] CBG Collections Unit - [3] CBG Project Management Team - [1] Kelsey J Mcgurrin - [1]