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The Public Data Portal supports queries based on taxonomy(scientific names only), geography, attribution fields (i.e. collectors and taxonomists), specimen depositories, project or dataset codes, specimen and sequence identifiers (sampleids, museumids, processed, etc). Free text searches are allowed, the system will try to extract meaningful terms from the search. Search terms should be separated by a space, search terms containing more than one word ("United States" or "Mus musculus") should be wrapped in quotes.
Search examples (Searches are case insensitive):
Culicidae: will return all the mosquitoes in the database
Mammalia Aves: will return all the mammals and birds in the database. Using two terms under the same context (taxonomic in this case), returns all records that match either term.
Aves Peru: will return all the birds collected in Peru. Using two terms under a different context (taxonomic and geographic), returns records that only match both terms.
Hawaii -Chordata: will return all non-chordates, or invertebrates, collected in Hawaii. It is often necessary to exclude records based on a search criteria and is accomplished by adding a minus sign immediately in front of the search term.
"Biodiversity Institute of Ontario" Lepidoptera Florida: will return all moths and butterflies in the Biodiversity Institute of Ontario collection that were collected in Florida. Complex queries are possible by combining multiple search terms.
Search Guidelines:
No spaces in terms when using a multiterm seach (correct: "United States" Mammalia)
Negative symbol (-) is an exclusion operator which must be preceded by a space
If the same term appears in multiple contexts (i.e. "Florida" appears in both the geography list and in "University of Florida"). When using a free text search for the state Florida, employ the context clarification '[geo]' (eg Florida[geo]). Other context clarification tags are [tax], [ids], [inst], [researcher].
Marko Mutanen, Sami M. Kivelä, Rutger A. Vos, Camiel Doorenweerd, Sujeevan Ratnasingham, Axel Hausmann, Peter Huemer, Vlad Dincă, Erik J. van Nieukerken, Carlos Lopez-Vaamonde, Roger Vila, Leif Aarvik, Thibaud Decaëns, Konstantin A. Efetov, Paul D. N. Hebert, Arild Johnsen, Ole Karsholt, Mikko Pentinsaari, Rodolphe Rougerie, Andreas Segerer, Gerhard Tarmann, Reza Zahiri, and H. Charles J. Godfray Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera. Society of Systematic Biologists 2016-06-10;65(6):1024-1040
Peter Huemer, Marko Mutanen, Kristina M. Sefc, Paul D. N. Hebert Testing DNA Barcode Performance in 1000 Species of European Lepidoptera: Large Geographic Distances Have Small Genetic Impacts PLoS ONE 2014-12-26;9(12):e115774 (PDF)
Peter Huemer, Paul D. N. Hebert DNA barcode library for Lepidoptera from South Tyrol and Tyrol (Italy, Austria) – Impetus for integrative species discrimination in the 21st Century Gredleriana 2016-12-01;16(X):141-164 (PDF)
Hausmann, Axel; Haszprunar, Gerhard; Segerer, Andreas H; Speidel, Wolfgang; Behounek, Gottfried; Hebert, Paul D N Now DNA-barcoded: the butterflies and larger moths of Germany (Lepidoptera: Rhopalocera, Macroheterocera) Spixiana 2011-09-01;34(1):47-58 (PDF)
Zahiri, Reza; Lafontaine, J. Donald; Schmidt, B. Christian; deWaard, Jeremy R.; Zakharov, Evgeny V.; Hebert, Paul D. N. A Transcontinental Challenge — A Test of DNA Barcode Performance for 1,541 Species of Canadian Noctuoidea (Lepidoptera) PLoS ONE ;9(3):e92797 (PDF)
Reza Zahiri, J. Donald Lafontaine, B. Christian Schmidt, Jeremy R. deWaard, Evgeny V. Zakharov, Paul D. N. Hebert Probing planetary biodiversity with DNA barcodes: The Noctuoidea of North America PLoS ONE 2017-06-01;12(6):0-0 (PDF)
Paul D. N. Hebert , Sujeevan Ratnasingham , Evgeny V. Zakharov , Angela C. Telfer , Valerie Levesque-Beaudin , Megan A. Milton , Stephanie Pedersen , Paul Jannetta and Jeremy R. deWaard Counting animal species with DNA barcodes: Canadian insects Philosophical transactions of the royal society b 2016-09-05;371(1702):0-0 (PDF)
Angela C Telfer, Monica R Young, Jenna Quinn, Kate Perez, Crystal N Sobel, Jayme E Sones, Valerie Levesque-Beaudin, Rachael Derbyshire, Jose Fernandez-Triana, Rodolphe Rougerie, Paul D N Hebert, Jeremy R deWaard and contributors. Biodiversity inventories in high gear: DNA barcoding facilitates a rapid biotic survey of a temperate nature reserve Biodiversity Data Journal 2015-08-30;3(e6313):1-176 (PDF)
Sujeevan Ratnasingham and Paul D. N. Hebert A DNA-Based Registry for All Animal Species: The Barcode Index Number (BIN) System PLoS ONE 2013-07-13;8(7):e66213 (PDF)
Thomas W. A. Braukmann, Natalia V. Ivanova Sean W. J. Prosser Vasco Elbrecht Dirk Steinke Sujeevan Ratnasingham Jeremy R. deWaard Jayme E. Sones Evgeny V. Zakharov Paul D. N. Hebert Metabarcoding a Diverse Arthropod Mock Community Molecular Ecology Resources 2019-02-18
Thomas WA Braukmann, Natalia V Ivanova, Sean WJ Prosser, Vasco Elbrecht, Dirk Steinke, Sujeevan Ratnasingham, Jeremy R deWaard, Jayme E Sones, Evgeny V Zakhariv, Paul DN Hebert Revealing the Complexities of Metabarcoding with a Diverse Arthropod Mock Community Molecular Ecology Resources 2018-10-02
TREE RECONSTRUCTION OF BIN & NEAREST NEIGHBOR:
HAPLOTYPE NETWORK:
Color & Label Scheme:
COLLECTION LOCATION:
Countries:
Canada - [299]
United States - [44]
United Kingdom - [6]
Spain - [6]
Germany - [11]
Finland - [4]
Italy - [8]
Austria - [13]
France - [7]
Iran - [1]
North Macedonia - [1]
Georgia - [3]
Norway - [8]
Netherlands - [2]
Russia - [3]
Portugal - [3]
Kyrgyzstan - [2]
Unrecoverable - [1]
Sweden - [1]
DATA MANAGERS:
Public Data:
Private Data:
Marten Klinth - [1] CBG Project Management Team - [214] Axel Hausmann - [20] Ben W Price - [1] Carlos Lopez-Vaamonde - [5] Matthew P Besley - [2] Marko Mutanen - [3] Peter Huemer - [13] Camiel Doorenweerd - [2] Franz Puehringer - [1] Arild Johnsen - [5] Rodolphe Rougerie - [3] Antonio S. Ortiz - [2] Sonia AF Ferreira - [3] Wolfgang Stark - [3] CBG Collections Unit - [4] Nikolaus U Szucsich - [2] Paul D.N. Hebert - [4] Steffen Roth - [1] Torbjorn Ekrem - [1] Jason R Grant - [4] Scott E. Miller - [1] Jeremy deWaard - [107] James B. Sullivan - [1] Derek S. Sikes - [2] Mark J. Mello - [2] Evgeny V. Zakharov - [5] Charles S Walker - [16] Marko J. Taehtinen - [1]
Stefano Scalercio - [3] Charles S Walker - [1] May Bente Brurberg - [1] Guilin Hu - [1] Peter Huemer - [1] Reza Zahiri - [1] Tara D. Gariepy - [2]
BIN COMPLIANT WITH METADATA REQUIREMENTS
Specimen Images:
LPVIB506-08 {Xestia smithii}
License:
CreativeCommons Attribution (2009)
License Holder:
CBG Photography Group, Centre for Biodiversity Genomics
Agriculture and Agri-Food Canada, Southern Crop Protection and Food Research Centre - [2]
Canadian Food Inspection Agency - [1]
Canadian Forest Service, Pacific Forestry Centre - [29]
Centre for Biodiversity Genomics - [224]
College of Charleston - [4]
Consiglio per la Ricerca in Agricoltura e l'analisi dell'economia agraria - [3]
Haus der Natur, Salzburg - [2]
Landesmuseum Kaernten - [3]
Mined from GenBank, NCBI - [16]
Museum national d'Histoire naturelle - [2]
NTNU University Museum, Department of Natural History - [1]
Natural History Museum, London - [6]
Naturalis Biodiversity Center - [2]
Naturmuseum Suedtirol - [2]
Norwegian Institute for Agricultural and Environmental Research - [1]
Private Collection of Aquilino Martinez Fernandez - [2]
Research Center in Biodiversity and Genetic Resources - [3]
Research Collection of Bernard Dardenne - [1]
Research Collection of Carlos Lopez Vaamonde - [3]
Research Collection of Daniel Handfield - [5]
Research Collection of Franz Puehringer - [1]
Research Collection of Guido Govi - [1]
Research Collection of J. B. Sullivan - [2]
Research Collection of Jeremy deWaard - [18]
Research Collection of Marko Taehtinen - [1]
Research Collection of Wolfgang Stark - [3]
Royal British Columbia Museum - [26]
SNSB, Zoologische Staatssammlung Muenchen - [19]
Smithsonian Institution, National Museum of Natural History - [1]
Station Linne - [1]
Tiroler Landesmuseum Ferdinandeum - [8]
Universidad de Murcia, Research Collection Biologia Animal - [2]
University of Alaska Museum - [6]
University of Bergen, Natural History Collections - [1]
University of British Columbia, Beaty Biodiversity Museum, Spencer Entomological Collection - [26]
University of Oslo, Natural History Museum - [5]
University of Oulu, Zoological Museum - [4]
inatura, Dornbirn - [1]
Sequencing Centers:
Centre for Biodiversity Genomics - [378] GATC Biotech AG - [1] Natural History Museum, London - [1] Naturalis Biodiversity Center - [2] Robarts Research Institute - [2] Zhengzhou University - [1]
Photography:
Alexandra Knapp - [8] CBG Photography Group - [72] Carlos Lopez Vaamonde - [2] Casey Bickford - [2] Chad Whitmell - [1] Christian Wieser - [2] Dr. Antonio S. Ortiz - [2] Ella Sippola - [1] Even Sannes Riiser - [1] G. Govi - [1] G. Rotheneder - [3] Giuseppe Rijllo - [3] Grace Bannon - [2] Gros Patrick - [1] Guilin Hu - [1] Hilary Lyttle - [1] Information Pending - [15] Jérôme Barbut - [2] J.Gill - [1] Jaclyn McCormick - [27] Jason Grant - [4] Jay Cossey - [2] Jeremy deWaard - [105] Jules Dessart-Pardon - [3] Kai Berggren - [4] Kerstin Wehinger - [1] Libby Avis - [10] Lutz Lehmann - [1] Megan Swan/ Jasmine St. Pierre - [1] Naturalis DNA barcoding facility - [2] Nick Jeffery - [8] Richard Mally - [1] Richard Wilson - [7] Rodolphe Rougerie - [1] Sesiidae Research Group - [1] Spencer Walker - [2] Toni Mayr - [1] Trude Magnussen - [1] ZSM Hymenoptera Photography Group - [2] ZSM Photography Team - [5] photo work group Dr. Axel Hausmann - [7]
Collectors:
A. Hausmann - [3] A. Li - [3] A. W. Thomas - [5] A.Voronkov - [1] Aarvik - [1] Ana Rita Goncalves - [2] Andreas Segerer - [1] Aquilino Martinez - [2] Aud I. - [40] BIO Collections - [2] BIO Collections Staff - [1] BIOBus 2012 - [1] BIObus 2008 - [12] BIObus 2009 - [4] BIObus 2010 - [22] BIObus: A.Borisenko - [2] Bernard Dardenne - [1] Buchner P. - [1] C. Abad - [2] CBG Collections Staff - [6] Carlos Lopez Vaamonde - [3] Ch. - [3] Chrystal Simon - [1] D.Collet - [1] D.Engelking - [5] D.Handfield - [2] Daniel Handfield - [3] Dominique M. Collet - [2] Dr David C. Lees - [1] Dr Michael F. Geiser - [1] Dr. Andreas H. Segerer - [3] Dr. D. Kolligs - [1] E. Stur - [1] Evan Perry - [4] F.Theimer - [1] F.Tremblay - [3] Fischer - [40] Frans Olofsson - [1] G. Govi - [1] G.M.Haggett - [1] Gergin Blagoev - [2] Goueset V. - [1] Gros - [1] H. Loebel - [1] H. Martin - [1] Hartmuth - [1] Hausmann - [2] Holden D. - [1] Huemer P. - [6] Huemer P. & Tarmann G. M. - [1] Irving Finkelstein - [4] J. Barbut - [1] J. Bolling Sullivan - [2] J. Derhousoff - [3] J.B.Sullivan - [2] J.R. - [96] J.Smith - [2] James Adams - [4] James K. Adams - [3] James Sones - [4] Jason Grant - [4] Jeremy deWaard - [3] Jerome Barbut - [1] Julian Small - [1] K.W.Phillip - [1] Kai Berggren - [4] Keil N. - [1] Keith Pickthorn - [3] Korb S.K. - [1] L Mavin & M Young - [5] L.Avis - [5] L.Gardiner - [2] Leif - [1] Libby Avis - [5] M. Franzen - [3] M.Kekkonen - [5] M.Milton - [2] M.Otway - [1] MRY 65 - [1] Marko Mutanen - [3] Marko Tahtinen - [1] Martin Corley - [3] Maxim Larrivee - [4] Mikko Pentinsaari - [2] Monica Trondhjem - [1] Nicole Labine - [4] P.Valmaki - [1] Panu Vaelimaeki - [2] Patrick - [1] Paul Hebert - [34] Prabir Roy - [2] R. Mally - [1] R.Avis - [5] R.Labbee - [2] R.Pojar - [5] Rainer & Uljana Busse - [1] Rein-Arne Golf - [1] Richard Wilson - [23] S. Scalercio C. Di Marco - [1] S.Devita - [2] S.Ratnasingham - [2] SMP 462 - [1] Scalercio & Infusino - [2] Shannon Dixon - [1] Sonia Ferreira - [3] Spence Lee - [2] Stark W. - [2] Stephanie Church - [2] Strutzberg - [1] Sverre Kobro - [1] T. Ekrem - [1] T.Eagalle - [5] Th. Drechsel - [1] V. Gurko - [1] V.Levesque-Beaudin - [2] Vanni Azzano - [2] Wieser - [3] deWaard - [96] leg. F. Puehringer (A-St. Konrad) - [1] lgt. W.Stark - [1] rare BioBlitz collecting team - [2]
Specimen Identification:
Andreas Segerer - [4] Angela Telfer - [15] Anthony W. Thomas - [5] Antonio S. Ortiz - [2] Aquilino ANTONIO Martinez fernandez - [2] Axel Hausmann - [13] BOLD ID Engine - [13] Bernard Dardenne - [1] Brian G. Scholtens - [3] Christian Wieser - [3] Clifford D. Ferris - [2] Crispin S. Guppy - [27] Daniel Handfield - [1] David Lees - [1] Detlef Kolligs - [1] F. Theimer - [1] Franz Puehringer - [1] Gavin R. Broad - [1] Gergin A. Blagoev - [13] Hartmuth Strutzberg - [1] J. Donald Lafontaine - [12] James B. Sullivan - [2] Jason R Grant - [4] Jeremy deWaard - [10] Jerome Barbut - [2] Jim T. Troubridge - [9] Julian Small - [1] Kaare H. Aagaard - [1] Kai Berggren - [4] Kate Perez - [20] Leif Aarvik - [1] Libby Avis - [10] Lotta AMELIE Moerch - [1] Lutz Lehmann - [1] Mark J. Mello - [1] Marko J. Taehtinen - [1] Marko Mutanen - [3] Marten Klinth - [1] Martin Corley - [3] Norbert Keil - [1] Patrick PG Gros - [1] Paul D.N. Hebert - [4] Peter Buchner - [1] Peter Huemer - [9] Reza Zahiri - [1] Richard L. Wilson - [18] Richard Mally - [1] Sverre Kobro - [1] Thomas Huet - [1] Tiara YASMEEN Hensel - [1] USNM Curators - [1] Wolfgang Stark - [3] Wouter Moerland - [2]